Godwyn- Most definitely. He was by far the most successful and respected of her kids with Godfrey, and most of all, he looked and acted the part. Losing him must've been devastating for her.
Morgott- Somewhat. Since he is an Omen, she would have him out of sight, out of mind, but most likely still had enough contact for him to develop some sort of loyalty to her. Maybe she tolerated him because of Godfrey's intervention?
Mohg- Very unlikely. He probably received the same treatment as Morgott, but most likely looked at Marika's neglect more harshly and didn't develop a connection, which was fine by Marika since he is an Omen at the end of the day.
Radahn- Extremely likely. He exemplifies everything she considers paramount in a consort to a goddess, as if Godfrey and Radagon fused together, so she made him one of her top generals in her empire,
Rykard- Likely. While he was unfit to be a consort, he showed grand potential in being a useful asset to her empire, so she gave him not only the power to confront the nobles of her empire, but even gave him an entire territory to govern over.
Ranni- Unlikely. Ranni's fixation on the moon and her care towards her mother's matters likely led to tension between her and Marika, but if the two finger's decision to make her an Empyrean was influenced by Marika, then maybe there was some care there.
Miquella- Likely. Even with his fundamentalist beliefs and eventual departure, Miquella still looked and acted the part of a powerful Empyrean. He's like a less warrior, more scholar-like version of Godwyn. Their relationship probably soured near the end though.
Malenia- Unlikely. Though she was powerful enough to be a general of the empire and to be considered an Empyrean, her curse of Scarlet Rot likely made Marika think of her in a similar manner to how she thought of Morgott and Mohg. More like she was part of a packaged deal to be close with Miquella.
Messmer- Extremely unlikely. Not only was he cursed with snakes coming out of him, but Marika saw him as the perfect tool to subjugate the Land of Shadow, and then outright abandons him there. Even Morgott and Mohg got a better deal than that.
Melina- Unclear. Marika did keep her around enough for her to recall "Echoes" of conversations she had, so maybe they were close considering how confidential some of those "echoes" were?