bobcamel said: Possibly because Kyubey getting eaten actually happened.
By another Kyubey. Apparently Kyubey must have struck some kind of deal with Gendo to wind up with a lot of extra copies of himself. Also, as for the HIH tag, didn't they mention something about their soul being in the gem now, to which Kyouko asked if they were essentially zombies now? Also seeing as how she ends up sacrificing herself latter in the show...